PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0370s00250.1
Common NameLR48_Vigan50s009900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 177aa    MW: 19589.3 Da    PI: 10.7488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0370s00250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-195096251
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                       y+GVr+++ +g+++AeIrdp+ ng   r+++g+f+taeeAa a+++a+ 
  Vang0370s00250.1 50 PYRGVRRRP-WGKFAAEIRDPTRNG--VRVWIGTFDTAEEAALAYDQAAF 96
                      69*******.**********98887..*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-3450114IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2250109IPR016177DNA-binding domain
PROSITE profilePS5103222.64250108IPR001471AP2/ERF domain
PfamPF008472.8E-135196IPR001471AP2/ERF domain
PRINTSPR003674.2E-115162IPR001471AP2/ERF domain
CDDcd000189.48E-2951107No hitNo description
Gene3DG3DSA:3.30.730.103.2E-2951108IPR001471AP2/ERF domain
PRINTSPR003674.2E-117490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDFNSSLFSI NNNATNESSL SLQEHTSDIT HDGSNPQPLS IGPTKKERKP YRGVRRRPWG  60
KFAAEIRDPT RNGVRVWIGT FDTAEEAALA YDQAAFLTRG VLATLNFSAQ KVVESLQDMG  120
FKALRNGVSP LLELKRMHVM RTKSRVSRSG AKKVKRVCTK LKPDPIAETV LDFGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2749107462ATERF1
3gcc_A6e-2749107462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162536.11e-92hypothetical protein PHAVU_001G160200g
SwissprotQ8LDC82e-43ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9T5031e-125A0A0L9T503_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RY651e-125A0A0S3RY65_PHAAN; Uncharacterized protein
STRINGGLYMA03G31920.12e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-34ethylene response factor 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]